NITheCS Software Carpentry (Shell, Git, R for Reproducible Scientific Analysis)

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The Unix Shell: Introducing the Shell

The Unix Shell: Navigating Files and Directories

The Unix Shell: Loops

The Unix Shell: Shell Scripts; Finding things

Version Control with Git: Automated Version Control; Setting up Git

Version Control with Git: Creating a repository, Tracking Changes, Exploring History, Ignoring Things, Remotes in Github

Version Control with Git

End of day

Introduction to R and RStudio

Project Management With RStudio

Seeking Help

Data Structures

Exploring Data Frames

Subsetting Data

Control Flow

Creating Publication-Quality Graphics with ggplot2

Functions explained

Writing Data

Data Frame Manipulation with dplyr and tidyr

Q & A

Data Frame Manipultion with dplyr and tidyr

Q&A

Producing Reports with knitr

Producing Reports with knitr

Writing Good Software

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29/09/2025

30/09/2025

01/10/2025

02/10/2025

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