Name: Software Carpentry (Shell, Git, Programming with R)
Start: 2026-03-16T09:00:00+02:00
End: 2026-03-20T13:01:00+02:00
Location: Online

Software Carpentry (Shell, Git, Programming with R)

from Monday 16 March 2026 (09:00) to Friday 20 March 2026 (13:01)

Monday 16 March 2026

09:00 Intro: Download files and Install software
Intro: Download files and Install software
09:00 - 09:10
Room: Online

09:10 Introducing the Shell and Navigating Files & Directories
Introducing the Shell and Navigating Files & Directories
09:10 - 09:30
Room: Online

09:30 Working With Files and Directories
Working With Files and Directories
09:30 - 09:50
Room: Online

09:50 Short break
Short break
09:50 - 10:00
Room: Online

10:00 Pipes & Filters
Pipes & Filters
10:00 - 10:30
Room: Online

10:30 Break
Break
10:30 - 11:30
Room: Online

11:30 Loops, Shell Scripts and Finding Things
Loops, Shell Scripts and Finding Things
11:30 - 13:00
Room: Online

13:00 End of day
End of day
13:00 - 13:01
Room: Online
Tuesday 17 March 2026

09:00 Intro: Installing Github, Creating Git account and preparing working directory
Intro: Installing Github, Creating Git account and preparing working directory
09:00 - 09:20
Room: Online

09:20 Automated Version Control & Setting Up Git
Automated Version Control & Setting Up Git
09:20 - 09:50
Room: Online

09:50 Short Break
Short Break
09:50 - 10:00
Room: Online

10:00 Creating a Repository & Tracking changes
Creating a Repository & Tracking changes
10:00 - 10:30
Room: Online

10:30 Break
Break
10:30 - 11:30
Room: Online

11:30 Exploring History &Remotes in GitHub
Exploring History &Remotes in GitHub
11:30 - 11:50
Room: Online

11:50 Collaborating, Conflicts & Open Science
Collaborating, Conflicts & Open Science
11:50 - 12:10
Room: Online

12:10 Licensing, Citation & Hosting
Licensing, Citation & Hosting
12:10 - 12:50
Room: Online

12:50 Supplemental: Using Git from RStudio
Supplemental: Using Git from RStudio
12:50 - 13:00
Room: Online

13:00 End of day
End of day
13:00 - 13:01
Room: Online
Wednesday 18 March 2026

09:00 Analyzing Patient Data
Analyzing Patient Data
09:00 - 09:20
Room: Online

09:20 Creating functions
Creating functions
09:20 - 09:50
Room: Online

09:50 Short Break
Short Break
09:50 - 10:00
Room: Online

10:00 Analyzing Multiple Data Sets
Analyzing Multiple Data Sets
10:00 - 10:30
Room: Online

10:30 Break
Break
10:30 - 11:30
Room: Online

11:30 Making choices
Making choices
11:30 - 11:50
Room: Online

11:50 Command Line Programs
Command Line Programs
11:50 - 12:50
Room: Online

12:50 Q&A
Q&A
12:50 - 13:00
Room: Online

13:00 End of Day
End of Day
13:00 - 13:01
Room: Online
Thursday 19 March 2026

09:00 Best Practices for Writing R Code
Best Practices for Writing R Code
09:00 - 09:20
Room: Online

09:20 Dynamic Reports with knitr
Dynamic Reports with knitr
09:20 - 09:50
Room: Online

09:50 Short Break
Short Break
09:50 - 10:00
Room: Online

10:00 Making Packages in R
Making Packages in R
10:00 - 10:30
Room: Online

10:30 Break
Break
10:30 - 11:30
Room: Online

11:30 Introduction to RStudio
Introduction to RStudio
11:30 - 12:30
Room: Online

12:30 Addressing Data
Addressing Data
12:30 - 13:00
Room: Online

13:00 End of day
End of day
13:00 - 13:01
Room: Online
Friday 20 March 2026

09:00 Reading and Writing CSV files
Reading and Writing CSV files
09:00 - 09:20
Room: Online

09:20 Understanding Factors
Understanding Factors
09:20 - 09:50
Room: Online

09:50 Short Break
Short Break
09:50 - 10:00
Room: Online

10:00 Data Types and Structures
Data Types and Structures
10:00 - 10:30
Room: Online

10:30 Break
Break
10:30 - 11:30
Room: Online

11:30 Data Types and Structures II
Data Types and Structures II
11:30 - 11:50
Room: Online

11:50 The Call Stack
The Call Stack
11:50 - 12:10
Room: Online

12:10 Loops in R
Loops in R
12:10 - 12:50
Room: Online

12:50 Summary and Q&A
Summary and Q&A
12:50 - 13:00
Room: Online

13:00 End of Workshop
End of Workshop
13:00 - 13:01
Room: Online

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